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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_58950.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 335aa MW: 36795.7 Da PI: 6.0997 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.7 | 9.4e-53 | 6 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtd+elv +yLk++v++ k+el evi+ +d+yk+ePw+Lp k + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++v + MLOC_58950.3 6 LPPGFRFHPTDDELVGYYLKRRVDNLKIEL-EVIPVIDLYKCEPWELPeKsFLPKRDLEWFFFVPRDRKYPNGSRTNRATTTGYWKATGKDRKVSCD 101 79****************************.99**************95334445667*************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++ g++ktLvfykgrap ge+tdWvmheyrl MLOC_58950.3 102 GGAVCGVRKTLVFYKGRAPGGERTDWVMHEYRL 134 *******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-60 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.064 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-28 | 7 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0071365 | Biological Process | cellular response to auxin stimulus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MGTMTLPPGF RFHPTDDELV GYYLKRRVDN LKIELEVIPV IDLYKCEPWE LPEKSFLPKR 60 DLEWFFFVPR DRKYPNGSRT NRATTTGYWK ATGKDRKVSC DGGAVCGVRK TLVFYKGRAP 120 GGERTDWVMH EYRLCQDLLH GASNFIGAYA LCRVIKRTEA GLLHGDAAAK AKPCHQQMTK 180 VGSSSSLVTT DQQLGSLTPS PPRLDIVGNA FQLHTSPSPL YGGEVVSGMG APLGFPQQDA 240 AATFFVDADL AGAGETTQSH MPFFGDMGVV SDHELRWDTL PPYANNTFST TAVAGAAELW 300 NPAAPNAAAP MLCREESDDL AAFFSSLDEN NMVVY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-51 | 1 | 160 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-51 | 1 | 160 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-51 | 1 | 160 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-51 | 1 | 160 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-51 | 1 | 161 | 15 | 172 | NAC domain-containing protein 19 |
3swm_B | 4e-51 | 1 | 161 | 15 | 172 | NAC domain-containing protein 19 |
3swm_C | 4e-51 | 1 | 161 | 15 | 172 | NAC domain-containing protein 19 |
3swm_D | 4e-51 | 1 | 161 | 15 | 172 | NAC domain-containing protein 19 |
3swp_A | 4e-51 | 1 | 161 | 15 | 172 | NAC domain-containing protein 19 |
3swp_B | 4e-51 | 1 | 161 | 15 | 172 | NAC domain-containing protein 19 |
3swp_C | 4e-51 | 1 | 161 | 15 | 172 | NAC domain-containing protein 19 |
3swp_D | 4e-51 | 1 | 161 | 15 | 172 | NAC domain-containing protein 19 |
4dul_A | 4e-51 | 1 | 160 | 12 | 168 | NAC domain-containing protein 19 |
4dul_B | 4e-51 | 1 | 160 | 12 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00439 | DAP | Transfer from AT4G17980 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368985 | 0.0 | AK368985.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2083F05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235019.2 | 1e-149 | PREDICTED: NAC domain-containing protein 72-like | ||||
Swissprot | A4VCM0 | 2e-71 | NAC45_ARATH; NAC domain-containing protein 45 | ||||
TrEMBL | M0XCW7 | 0.0 | M0XCW7_HORVD; Uncharacterized protein | ||||
STRING | MLOC_58950.3 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6209 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 1e-82 | NAC domain containing protein 71 |